Life history plasticity of Nemoura trispinosa (Plecoptera: Nemouridae) along a permanent-temporary water habitat gradient

1. The life history of the small herbivorous stonefly Nemoura trispinosa Claassen was studied in a variety of small springs in southern Ontario, Canada. Nymphs generally were able to tolerate a wide range of environmental conditions and were found in 78% of habitats sampled, although population densities differed markedly. 2. Life-cycle patterns varied from a univoltine, slow seasonal type to a univoltine, fast seasonal type with extended egg development. In one, highly stable, spring the life cycle was semivoltine. Inter-year variation was studied for 5 years in one spring and was found to be low relative to among-spring variation. 3. Differences in the life history traits of N. trispinosa populations from our spring series were most probably an expression of phenotypic plasticity rather than of genetic differentiation. 4. Maximum annual water temperature was the factor most influential on nymphal growth rate (non-linear relationship), whereas range in generation time was related to the degree of habitat permanence.     

Whole-body mechanics and kinematics of terrestrial locomotion in the Elegant-crested Tinamou Eudromia elegans

Whereas humans and certain birds experience an abrupt change in locomotor dynamics when shifting from walks to runs, a smooth walk–run transition characterizes many ground-dwelling birds. This study defines the biomechanical distinction between walks and runs in the Elegant-crested Tinamou Eudromia elegans using ground reaction forces. Three birds were filmed at 250 Hz from a lateral view as they moved over a force plate built into a trackway. Centre of mass mechanics and kinematic variables were analysed in 81 steady-speed trials that represented a speed range from 0.66 to 2.78 m/s. E. elegans undergoes two speed-related changes in locomotor mechanics. The first is a shift from walking strides that utilize vaulting mechanics to low-speed runs that exhibit bouncing mechanics; this transition occurs at Froude numbers between 0.4 and 0.6. Such low-speed runs exhibit duty factors exceeding 0.5 and, hence, lack an aerial phase between steps. The second transition, from grounded running to aerial running, occurs when duty factors decrease below 0.5. Grounded running in birds may enhance vision by stabilizing visual stimuli over the retina. The eventual incorporation of an aerial phase during running enables increased locomotor speeds primarily through longer stride lengths.     

Responses of macroinvertebrate communities to long‐term flow variability in a Sonoran Desert stream

Current global models predict a hotter and drier climate in the southwestern United States with anticipated increases in drought frequency and severity coupled with changes in flash flood regimes. Such changes would likely have important ecological consequences, particularly for stream and riparian ecosystems already subject to frequent hydrologic disturbance. This study assessed the potential response of aquatic macroinvertebrates to interannual variation in hydrology in a spatially intermittent desert stream (Sycamore Creek, AZ). We compiled data on the recovery of macroinvertebrate communities following spring floods, with successional sequences captured 11 times over a 16‐year period (1983–1999). This period encompassed a transition from perennial to intermittent flow in this system, and included a record drought in 1989–1990. Results show that while the size of floods initiating sequences had little explanatory power, changes in macroinvertebrate community structure during postflood succession were closely associated with antecedent flooding and drought. Year‐to‐year differences in benthic communities integrated taxon‐specific responses to antecedent disturbance, including differential resistance to channel drying, use of hyporheic refugia, and variable rates of recovery once stream flow resumed. The long‐term consequences of drying on community structure were only evident during later stages of postflood succession, illustrating an interaction between flood and drought recovery processes in this system. Our observations highlight the potential for predicted climate changes in this region to have marked and long‐lasting consequences for benthic communities in desert streams.     

The origin and fate of morphological intermediates between wild and cultivated soybeans in their natural habitats in Japan

The spread of transgenes into the genome of wild soybean is a concern when transgenic and wild soybeans are planted sympatrically. The objectives of this study were to investigate the origin and fate of morphological intermediates between wild and cultivated soybeans in their natural habitats in Japan. Twenty nuclear microsatellite and two chloroplast dCAPS markers were used to evaluate genetic variation of 468 wild, 17 intermediate, and 12 cultivated soybean samples collected from six sites between 2003 and 2006. Allelic differentiation of microsatellite markers between wild and cultivated soybeans was sufficient to detect their hybrids. Based on levels of observed heterozygosity, intermediate soybean plants were from two generations: either F₁ or an early segregating generation. Genetic admixture analysis and parentage assignment analysis revealed that the parents of all intermediate soybean plants could be assigned to a particular wild soybean plant and late‐maturing cultivar. The chloroplast DNA haplotypes revealed that all intermediate soybean plants originated from gene flow from cultivated to wild soybeans at all sites. Based on monitoring at both the phenotypic and molecular levels, hybrids quickly disappeared from natural habitats, and secondary gene flow from these plants to wild soybean was not detected. Thus, while gene flow from transgenic soybean into wild soybean can occur, gene introgression appears to be rare in natural habitats in Japan. This is the first report on the detection of gene flow from cultivated to wild soybean at the molecular level.     

Responses of two species of heathland rodents to habitat manipulation: Vegetation density thresholds and the habitat accommodation model

The abundance of two native rodent species, Rattus lutreolus and Pseudomys gracilicaudatus, has been shown to correlate with vegetation density in coastal wet heath. Fox's habitat accommodation model relates relative abundances of such small mammal species to heathland vegetation regeneration following disturbance. Implicit in the model is recognition that it is successional changes in vegetation, not time per se, that drives the responses of small mammal species along a regeneration axis. Using a brush‐cutter we deliberately removed approximately 85% of vegetation around trapping stations and recorded significant reductions in the abundance of both P. gracilicaudatus (an earlier‐stage colonizing species) and R. lutreolus (a late seral‐stage species). A significant decrease in the abundance of only the latter had been demonstrated previously when 60–70% of the vegetation had been removed. Following the brush‐cutting both species re‐entered the mammalian secondary succession at different times, first P. gracilicaudatus followed by R. lutreolus after the vegetation cover thresholds of each species had been reached. The impact of this habitat manipulation experiment was to produce a retrogression of the small mammal succession, experimentally demonstrating causality between changes in vegetation density and subsequent small mammal habitat use.     

Beyond aflatoxin: four distinct expression patterns and functional roles associated with Aspergillus flavus secondary metabolism gene clusters

Species of Aspergillus produce a diverse array of secondary metabolites, and recent genomic analysis has predicted that these species have the capacity to synthesize many more compounds. It has been possible to infer the presence of 55 gene clusters associated with secondary metabolism in Aspergillus flavus ; however, only three metabolic pathways—aflatoxin, cyclopiazonic acid (CPA) and aflatrem—have been assigned to these clusters. To gain an insight into the regulation of and to infer the ecological significance of the 55 secondary metabolite gene clusters predicted in A. flavus, we examined their expression over 28 diverse conditions. Variables included culture medium and temperature, fungal development, colonization of developing maize seeds and misexpression of laeA , a global regulator of secondary metabolism. Hierarchical clustering analysis of expression profiles allowed us to categorize the gene clusters into four distinct clades. Gene clusters for the production of aflatoxins, CPA and seven other unknown compound(s) were identified as belonging to one clade. To further explore the relationships found by gene expression analysis, aflatoxin and CPA production were quantified under five different cell culture environments known to be conducive or nonconducive for aflatoxin biosynthesis and during the colonization of developing maize seeds. Results from these studies showed that secondary metabolism gene clusters have distinctive gene expression profiles. Aflatoxin and CPA were found to have unique regulation, but are sufficiently similar that they would be expected to co-occur in substrates colonized with A. flavus .     

The influence of germinating seeds and developing roots on re-establishment of micro-organisms in fumigated soil

A laboratory study was made of re-invasion of soils fumigated in closed containers at rates of 3 ml./sq.ft. 10 in. deep with chloropicrin, methyl bromide and a 67:33 mixture of the two materials (MBC–33), using the dilution plate method of determination. Counts after aeration, 3 weeks later, showed that all three fumigants eliminated practically all fungi. Chloropicrin and MBC–33 also killed almost all bacteria and actinomycetes, whereas fumigation with methyl bromide markedly increased numbers of bacteria without materially altering numbers of actinomycetes. Subsequently, in soils fumigated with chloropicrin or MBC–33, fungi recolonized rapidly, but up to 93 % of the colonies isolated were Trichoderma viride. Increase of fungi in soils fumigated with methyl bromide was slower and Penicillium spp. predominated. Bacteria at first declined in numbers, then increased rapidly in soils fumigated with all three materials. In soils fumigated with methyl bromide, actinomycetes, usually considered to include good antagonists, increased but did not exploit their initial advantage over fungi. In soils fumigated with chloropicrin and MBC–33 actinomycetes did not recolonize in appreciable numbers. The greatest variety of fungous genera occurred in isolates from rhizo-spheres of red beet, but the greatest numbers of colonies of both fungi and bacteria were isolated from rhizospheres of pea and pumpkin. None of the crops tested greatly stimulated recolonization by actinomycetes. Compared with the drastic changes brought about by fumigants the influence of seed and root exudates on either the magnitude or the composition of re-invading micro-organisms was slight.     

Scale-dependent effects of fine sediments on temperate headwater invertebrates

1. Anthropogenic activities can increase fine sediment supply to streams over multiple spatial and temporal extents. Identifying the processes responsible, and the scale at which any effects on stream organisms become evident, are key management needs, but appropriately scaled surveys are surprisingly few. 2. We surveyed macroinvertebrates and superficial fine sediments at two spatial resolutions (reach‐ and patch‐scale) in tributaries of the River Usk, a temperate, montane catchment in rural Wales (U.K.). Land use, habitat and geomorphological character were measured on‐site or derived from an existing database (=Fluvial Audit). We aimed to identify: (i) how in‐stream sediments varied with land use and associated geomorphology; (ii) likely consequences for macroinvertebrates and (iii) any scale‐dependence in relationships between macroinvertebrates and sediment character. 3. At both the reach‐ and patch‐scales, bed cover by fine sediment was related directly to the extent of eroding banks 500 m upstream. In turn, sedimentation and bank erosion were negatively correlated with catchment or riparian woodland extent. 4. At the reach scale, macroinvertebrate composition varied with catchment land use and stream chemistry, with richness declining as rough grazing or woodland was replaced by improved grassland. There was no response to deposited sediment except for weak increase in the relative abundance of oligochaetes. 5. By contrast, at the patch scale, fine sediments were accompanied by pronounced changes in invertebrate composition, and we ranked the 27 most common taxa according to their apparent sediment tolerance. General estimating equations showed that total and Ephemeroptera, Plecoptera and Trichoptera richness decreased significantly by 20% and 25% at the most sediment impacted sites (30% cover) by comparison with sediment‐free sites. 6. We conclude that sediment deposition in the upper Usk system mostly reflects local bank erosion, with riparian woodland likely to mediate this process through bank stability. Fine sediment release had marked ecological effects, but these were detectable only at patch‐to‐patch scales. We suggest that investigation of localized sediment release in streams will benefit from scale‐dependent or scale‐specific sampling, and some effects could go undetected unless sample resolution is selected carefully.